Cyr, H. and G.K. Nürnberg. (in press) Methodological biases in phosphate adsorption experiments. In Serrano, L. and H.L. Golterman (eds) Phosphate in Sediments. Backhuys Publishers, the Netherlands.

Cyr, H. and S.C. Walker (2004) An illusion of mechanistic understanding.  Ecology 85(7): 1802-1804.  (invited comment)

Walks, D.J. and H. Cyr (2004)  Movement of plankton through Lake-Stream Systems.  Freshwater Biology 49(6): 745-759.

Harris, G.P., S.W. Bigelow, J.J. Cole, H. Cyr, L.A. Janus, A.P. Kinzig, J.F. Kitchell, G.E. Likens, K.H. Reckhow, D. Scavia, D. Soto, L.M. Talbot, P.H. Templar.  (2003) The role of models in ecosystem management. pp. 299-307. In Canham, C.D., J.J. Cole and W.K. Lauenroth (eds) Models in Ecosystem Science. Cary Conference IX, Princeton University Press.

Cyr, H., P.J. Dillon and J.E. Parker. 2003. The temporal scaling of environmental variability in rivers and lakes. pp. 201-213. In Seuront, L. and P. Strutton (eds). Handbook of Scaling Methods in Aquatic Ecology: Measurement, Analysis, Simulation. CRC Press. 

Hirst, C.N., H. Cyr and I.A. Jordan. 2003.   Distribution of exopolymeric substances in the littoral sediments of an oligotrophic lake.  Microbial Ecology 46(1): 22-32.

Cyr, H. and I. Cyr. 2003. Temporal scaling of temperature variability from land to oceans.  Evolutionary Ecology Research

Finlay, K.P., H. Cyr and B.J. Shuter. 2001. Spatial and temporal variability in water temperatures in the littoral zone of a multibasin lake. Canadian Journal of Fisheries and Aquatic Sciences 58: 609-619.

Cyr, H. 2000. The allometry of population density and inter-annual variability. pp. 267-295. In Brown, J.H. and G.B. West (eds). Scaling in Biology. Oxford University Press, Oxford.

Cyr, H. and J.M. Curtis. 1999. Zooplankton community size structure and taxonomic composition affect size-selective grazing in natural communities. Oecologia 118:306-315.

Cyr, H. 1998. Cladoceran- and copepod-dominated zooplankton communities graze at similar rates in low productivity lakes. Canadian Journal of Fisheries and Aquatic Sciences 55: 414-422.

Cyr, H. 1998. The effects of wave disturbance and substrate slope on sediment characteristics in the littoral zone of small lakes. Canadian Journal of Fisheries and Aquatic Sciences 55: 967-976.

Cyr, H. 1998. How does the vertical distribution of chlorophyll vary in littoral sediments of small lakes? Freshwater Biology 39: 25-40.

Cyr, H., J.A. Downing, and R.H. Peters. 1997. Density-body size relationships in local aquatic communities. Oikos 79: 333-346.

Cyr, H. 1997. Does inter-annual variability in population density increase with time? Oikos 79: 549-558.

Cyr, H., R.H. Peters, and J.A. Downing. 1997. Population density and community size structure: comparison of aquatic and terrestrial systems. Oikos 80: 139-149.

Cyr, H. and R.H. Peters. 1996. Biomass-size spectra and the prediction of fish biomass in lakes. Canadian Journal of Fisheries and Aquatic Sciences 53:994-1006.

Cyr, H. and M.L. Pace. 1993. Allometric theory: extrapolation from individuals to communities. Ecology 74:1234-1245.

Cyr, H. and M.L. Pace. 1993. Magnitude and patterns of herbivory in aquatic and terrestrial ecosystems. Nature 361:148-150.

Pace, M.L., S.B. Baines, H. Cyr and J.A. Downing. 1993. Relationships among early life history stages of Morone americana and Morone saxatilis from long term monitoring of the Hudson River Estuary. Canadian Journal of Fisheries and Aquatic Sciences 50:1976-1985.

Sprules, W.G., B. Bergstrom, H. Cyr, B.R. Hargreaves, S.S. Kilham, H.J. MacIsaac, K. Matsushita, R.S. Stemberger, R. Williams. 1992. Non-video optical instruments for studying zooplankton distribution and abundance. Archiv für Hydobiologie, Beih. Ergebnisse der Limnologie 36: 45-58.

Cyr, H. and M.L. Pace. 1992. Grazing by zooplankton and its relationship to community structure. Canadian Journal of Fisheries and Aquatic Sciences 49: 1455-1465.

Cyr, H., J.A. Downing, S. Lalonde, S.B. Baines, and M.L. Pace. 1992. Sampling larval fish populations: choice of sample number and size. Transactions of the American Fisheries Society 121: 356-368.

Cyr, H. and J.A. Downing. 1988. The abundance of phytophilous invertebrates on different species of submerged macrophytes. Freshwater Biology 20: 365-374.

Cyr, H. and J.A. Downing. 1988. Empirical relationships of phytomacrofaunal abundance to plant biomass and macrophyte bed characteristics. Canadian Journal of Fisheries and Aquatic Sciences 45: 976-984.

Downing, J.A. and H. Cyr. 1985. Quantitative estimation of epiphytic invertebrate populations. Canadian Journal of Fisheries and Aquatic Sciences 42: 1570-1579.